Exploratory analyses of sc proteomics data

This package includes two “mini-analyses” of single-cell proteomics data from the BIRS Biointegration hackathon:

1. Transferring cell type labels. Data from different studies, technologies, with:

• Limited overlap in features
• No overlap in samples

1. Tumor spatial autocorrelation and clinical prognosis

Read more about the BIRS Biointegration hackathon challenge datasets here: https://github.com/BIRSBiointegration/Hackathon/tree/master/sc-targeted-proteomics

Data download and set-up

Download the datasets and add them to the data folder. These vignettes use:

• mibiSCE.rda
• masstagSCE.rda
• Link to download: https://drive.google.com/drive/folders/1Qb6VgVkWfy2x5Dr7kzqMAfzOLas1G6v-